Gene families identification with Orthofinder workflow
Summary
| Name | Gene families identification with Orthofinder workflow | |||||||||||||||||||||||||||
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| Description | OrthoFinderIdentifies orthologous protein sequence families. OrthoFinder provides a three-steps method that first perform orthogroup inference, then, it deduces rooted species and gene trees for lastly determine orthologs and gene duplication events from these rooted gene trees. The application is able to produce a wide of outputs including orthogroups and their gene trees, the rooted species tree, gene duplication events, as well as comparative genomics statistics. [source : omictools]
More informations : https://github.com/davidemms/OrthoFinder/blob/master/README.md
Proteomes used in this analysis :
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| Program, Pipeline, Workflow or Method Name | OrthoFinder | |||||||||||||||||||||||||||
| Program Version | v2.2.1 | |||||||||||||||||||||||||||
| Algorithm | DIAMOND or MMseqs2, MCL, FastME | |||||||||||||||||||||||||||
| Date Performed | Friday, May 4, 2018 | |||||||||||||||||||||||||||
| Data Source |
