Summary
Resource Type
InterPro Results
Name
InterPro (5.26) Annotations of Sorghum bicolor v3.1 predicted proteins
Description

InterPro is a resource that provides functional analysis of protein sequences by classifying them into families and predicting the presence of domains and important sites. To classify proteins in this way, InterPro uses predictive models, known as signatures, provided by several different databases (referred to as member databases) that make up the InterPro consortium.

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Available analyses:

  • TIGRFAM (15.0) : TIGRFAMs are protein families based on Hidden Markov Models or HMMs.
  • SFLD (3) : SFLDs are protein families based on Hidden Markov Models or HMMs.
  • SignalP_GRAM_NEGATIVE (4.1) : SignalP (organism type gram-negative prokaryotes) predicts the presence and location of signal peptide cleavage sites in amino acid sequences for gram-negative prokaryotes.
  • SUPERFAMILY (1.75) : SUPERFAMILY is a database of structural and functional annotation for all proteins and genomes.
  • PANTHER (12.0) : The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a unique resource that classifies genes by their functions, using published scientific experimental evidenc
    e and evolutionary relationships to predict function even in the absence of direct experimental evidence.
  • Gene3D (4.1.0) : Structural assignment for whole genes and genomes using the CATH domain structure database.
  • Hamap (201701.18) : High-quality Automated and Manual Annotation of Microbial Proteomes.
  • Coils (2.2.1) : Prediction of Coiled Coil Regions in Proteins.
  • ProSiteProfiles (20.132) : PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them.
  • SMART (7.1) : SMART allows the identification and analysis of domain architectures based on Hidden Markov Models or HMMs.
  • CDD (3.16) : Prediction of CDD domains in Proteins.
  • PRINTS (42.0) : A fingerprint is a group of conserved motifs used to characterise a protein family.
  • ProSitePatterns (20.132) : PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them.
  • Pfam (31.0) : A large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs).
  • SignalP_EUK (4.1) : SignalP (organism type eukaryotes) predicts the presence and location of signal peptide cleavage sites in amino acid sequences for eukaryotes.
  • ProDom (2006.1) : ProDom is a comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database.
  • MobiDBLite (1.0) : Prediction of disordered domains Regions in Proteins.
  • PIRSF (3.02) : The PIRSF concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relation
    ships.
  • SignalP_GRAM_POSITIVE (4.1) : SignalP (organism type gram-positive prokaryotes) predicts the presence and location of signal peptide cleavage sites in amino acid sequences for gram-positive prokaryotes.
InterPro Program
InterProScan
InterPro Version
5.26-65.0
Date Performed
Friday, August 24, 2018
Query File Source
Source Name
: Sbicolor_313_v3.1.protein.faa
Source Version
: v3.1 (314)
Source URI
: https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Sbicolor